FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003471726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36108102
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACAA1607240.4451189375725149No Hit
CAAACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT1131770.3134393494291115No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACAA1118720.30982520211114944No Hit
CAAAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA927110.2567595494218998No Hit
CAAACAAAAAAACTCCTCACTTCCCAATAAAAACGACCGAGATCGGAAGAG886000.2453742930049328No Hit
CAACCGCCCCTACTAAAAAATAAAAAACCCCTCTACCCGAGATCGGAAGAG884780.24503641869628043No Hit
CAAAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATAA835420.23136635650359022No Hit
CAAACGAAAAACTAACCCCCCCACCTCCCTCCCGAGATCGGAAGAGCGTCG821760.227583272031302No Hit
CAAAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA820380.2272010863379083No Hit
CAACTAAAACGATAAAACCCCGTCTCTACTAAAAATACAAAAAATTAACCG603710.16719516301355303No Hit
CAAAAAAAAAATAAAAAAATCAACCCCCCGCCCGAGATCGGAAGAGCGTCG595920.16503775246896113No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTTAAAAAACTAAAACA534890.1481357286517026No Hit
CAAACCCATAACACTTAAAAATAACTAAAATAAACTATATCCAACATCTAA529780.14672053380152741No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG527690.14614171633834422No Hit
CAACTCCAACATCTCACAATACTATCACATACACACCCCCCAAACAAAAAT437470.12115563426734531No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTCGAAAAACTAAAACA433730.1201198556490175No Hit
CAAATCCATCATCCACAACCTTAACAATAAACAAAATATTCAAAAAATAAA433000.11991768495613533No Hit
CAAATATCAAAAAAATACCTTAAATAACCTCTAAAACTCAAAAATAAAAAA426210.11803722056617652No Hit
CAAACTACGAACTACAATAACGCAATCTCGACTCACTACAAACTCCGCTTC381760.10572696399273492No Hit
CAATCATATAACAATAAAAATAATTTAATTTAAACATCCAAGATCGGAAGA376130.10416775714215054No Hit
CAAAACAAAAACAAATTAAACAATCTACCCTCCCTTAACAAAAAACTACTC372340.10311813121609105No Hit
CAAAAAACGAAACTTACAATAAACCGAAATTACGCCACTACAATCCGCAAT371920.10300181383114515No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)