FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003472159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003472159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432043
Sequences flagged as poor quality0
Sequence length1-382
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
A19264844.59000608735705No Hit
C15290.3538999590318556No Hit
AT7360.170353413896302No Hit
GA6940.16063215929895866No Hit
CAGATGGGTGGAAGCACTCCAGTTCTGACCCCTGGAAAGACACCAATTGG5470.12660776820825706No Hit
CAACTGGAGATTTACCTGACAGCGAATCATAACATGGGTCACTTTAGACT5240.12128422402399762No Hit
GAGGGACCAGGGTTGGAAATAGAATGCGGGAAGGAGCAGCTTGGCTAAAC5130.11873818115326483No Hit
TACTTGGCTAACACTTTGGTGTGAGTATTGATGACATTCAAAGCTTCCTT5010.11596067983973818No Hit
T4920.11387755385459317No Hit
TGTAAAGTGGTATGCCTTATCCAGAATGGAAGTTTCAAGGAAGCTTTGAA4890.11318317852621151No Hit
CTGCAGGAATCAGAAGGTCAGGGCTGTCCTTTCTGCCGATGTGAAATTAA4460.1032304654860743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)