FastQCFastQC Report
Wed 8 May 2024
EGAF00003472159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003472159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432043
Total Bases24.7 Mbp
Sequences flagged as poor quality0
Sequence length1-382
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
A19264844.59000608735705No Hit
C15290.3538999590318556No Hit
AT7360.170353413896302No Hit
GA6940.16063215929895866No Hit
CAGATGGGTGGAAGCACTCCAGTTCTGACCCCTGGAAAGACACCAATTGG5660.13100547862134093No Hit
CAACTGGAGATTTACCTGACAGCGAATCATAACATGGGTCACTTTAGACT5510.12753360197943261No Hit
GAGGGACCAGGGTTGGAAATAGAATGCGGGAAGGAGCAGCTTGGCTAAAC5440.12591339287987538No Hit
TACTTGGCTAACACTTTGGTGTGAGTATTGATGACATTCAAAGCTTCCTT5300.12267297468076094No Hit
TGTAAAGTGGTATGCCTTATCCAGAATGGAAGTTTCAAGGAAGCTTTGAA5240.12128422402399762No Hit
T4920.11387755385459317No Hit
CTGCAGGAATCAGAAGGTCAGGGCTGTCCTTTCTGCCGATGTGAAATTAA4570.10577650835680709No Hit
ACACACATTTCCATGGACCAGGTCTTTATCCTCCTGCAGAGTAAAAAGGT4350.10068442261534152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)