FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003472175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003472175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3400368
Sequences flagged as poor quality0
Sequence length8-360
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGGGACAAGGCGGCCAGCACCTCTTGGGCCTGCACCCCTCACCTGTAG49140.1445137702742762No Hit
CTTACCAGCCTGGTGGATCCAGAAAGGGGAGCCCAGGTAGCTGTGAACAG39660.11663443486116797No Hit
CTGCCGACCAACGAACTGGTCCCTTTGTTCTTCCCTCTCCACAGGCAAAG38270.11254664201051182No Hit
CAGAGGAGTTGGTGGGTGTGAGTGCCCCTGTCCCTGCACTTCGGGTGGCT37830.11125266441749836No Hit
ACACACATTTCCATGGACCAGGTCTTTATCCTCCTGCAGAGTAAAAAGGT35490.10437105630919946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)