FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003472178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003472178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6164941
Sequences flagged as poor quality0
Sequence length8-329
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGGGACAAGGCGGCCAGCACCTCTTGGGCCTGCACCCCTCACCTGTAG93490.15164784220968214No Hit
ACCGAAGATTGCAGCCTTCTTGCCTGGGGACCATGCCCCTGTCTGTGTGC86660.14056906627330254No Hit
ACATGCTTCTGTGTGACGCTGCGGACGTCCCCGACGTACATGATCTTCCC75860.12305065044418105No Hit
CATGCTCCTCCTTGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAA74840.12139613339365292No Hit
CAGAGGAGTTGGTGGGTGTGAGTGCCCCTGTCCCTGCACTTCGGGTGGCT73940.1199362654078928No Hit
CCAGAAGCAGGCCAACTACCTCTTGTGCGCTCATCAATAATCTCCTTGAC73000.11841151440054333No Hit
CTTACCAGCCTGGTGGATCCAGAAAGGGGAGCCCAGGTAGCTGTGAACAG70690.11466451990375902No Hit
GATGTTATCCGTGCGCAGGATCTGCTTCTTGAGGTGGCTCATGAGGTCTC70380.11416167648644164No Hit
GGGACACCGATGGGCCTGCATCTGACCTGTTGTGCTCACTGCTTAGGACC68710.11145281033508674No Hit
ACACACATTTCCATGGACCAGGTCTTTATCCTCCTGCAGAGTAAAAAGGT67260.1091008008024732No Hit
CCTCCCAAGGCTTCAGCTCTGACAGCAGAGGGTGGAAGCTGCCTCATCTC65200.10575932519062226No Hit
TCCATTTCAGTGCACCATAAGATGTCCTCTTTCTCATTCATGAAGACAGG64590.10476985911138485No Hit
CCAACCATCCAATCGGACAAGCTTTCAGAACCTTATTGAAGGATTTGAAG63840.10355330245658473No Hit
CGTGGGGAGGCAGGACCACAGCTGGCCCACACCCTGCAGCCGTGACTCAC63050.10227186278019529No Hit
GGAGGCCACAACAGCCTCACCTGCAGCAGTTGTTGTTTCCGCACATGAGC62910.10204477220463262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)