FastQCFastQC Report
Sun 2 Apr 2023
EGAF00003472179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003472179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23406021
Sequences flagged as poor quality0
Sequence length8-376
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCAAGGCTTCAGCTCTGACAGCAGAGGGTGGAAGCTGCCTCATCTC438400.18730223304507843No Hit
CAGCTGTATGACCGTGGGACCAGTGGAGTTCTTGGGATCTCTGGGGCCAT419680.17930429097709516No Hit
TCCTTAGATGTCTCCTTGCTGGCATCAGACTCAGAGCCCCTGAAGTGTTT393890.16828575860886394No Hit
GTCTTGCCCTCAGGCCTGCCGGCTCCCCCCAGTATCATCAAGGCCATGGG344560.14720998498634177No Hit
CCCTGCTGACATCCCTGTAGTGCGCCTCCCCACCCCAAACTTGCACTGGA340650.14553947465056105No Hit
GACTCACCTGCATCTCCAGGCAGGTCCACAGTCACAGGGAGGGACCAGGA305980.1307270466859788No Hit
GGGGAGTGGGGCACAGTCCAGCACCTACCGCGGGTAGGCATACAGCAGCT281270.12016993405243889No Hit
CCAACCATCCAATCGGACAAGCTTTCAGAACCTTATTGAAGGATTTGAAG265780.11355197878357881No Hit
TGTTGCTTGACCATACCTTCCAGTCCTGATGGCCTTCTCCTGTGTATCGG261570.11175329629927273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)