FastQCFastQC Report
Thu 23 Mar 2023
EGAF00003472630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003472630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84965237
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTTGATTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT31223763.6748864715106957No Hit
GTCTTTGATTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA6444050.7584337109540459No Hit
GCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCA1903840.22407281698043163No Hit
GTCTTTGATTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC1883470.22167536589111145No Hit
TCTTTGATTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGTA1879020.2211516222805334No Hit
GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGAT1023910.12050928546224146No Hit
TGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTG939740.11060288103474601No Hit
GGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGG912480.10739451006298022No Hit
AAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTT907820.10684605046179063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)