FastQCFastQC Report
Wed 22 Mar 2023
EGAF00003472633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003472633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82810210
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGCCGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT11013821.3300074954525536No Hit
AGGCCCGCCGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA4956780.598571118223224No Hit
AGGCCCGCCGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC1212950.14647348436865454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)