FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003476427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003476427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72887077
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1329240.18236977729261938No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1209840.16598827251640233No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG805550.11052027782647944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)