FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003476451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003476451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38461059
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1719760.4471431740868082No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA602120.15655315159158775No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA560800.14580981766518702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)