FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003477218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003477218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52418356
Sequences flagged as poor quality0
Sequence length25-51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA31042955.922152537557645No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3061750.5840988221759569No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1317890.2514176522438056No Hit
CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1164770.22220651101686595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)