FastQCFastQC Report
Sun 14 May 2023
EGAF00003477243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003477243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84438026
Sequences flagged as poor quality0
Sequence length35-51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9951431.1785483947718058No Hit
CTTCATTCCAGGGAGGCCAGCTGTTCCGGGCAATCCTCGAGCACCCTGAGG1558050.18451994602526592No Hit
CTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTT1555930.1842688743102545No Hit
CTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCC1114920.13204003608516382No Hit
CTCCTCTTTCTCCTTTAGCACCAGGTTGACCAGCAGCACCAGCAGGACC969030.11476227547053267No Hit
CTCCTGTTCAATCGTTTCTTTGGAAGGCAGTGGATTTTTCTCTTGCGTCTC950780.11260092698045783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)