FastQCFastQC Report
Sun 2 Apr 2023
EGAF00003477266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003477266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60344177
Sequences flagged as poor quality0
Sequence length35-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCCC1489710.24686889010019972No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG1094560.18138618412179192No Hit
CAGCAGGCCACTGCTACAAGTCCCGCATCCAGGTGAGACTGGGAGAGCAC891580.14774913576168253No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT876570.14526173751611526No Hit
GTTCTTTCTGTTGCTTTTCACCATTGGGTTCTGCTGGGCTCAGTATTCCCC773140.12812172415575407No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA748010.12395727925827871No Hit
GCCAATTAAAAGCAGTGACTACTTTGGTAATGGCCGGGTGACAGAATTCA627750.10402826440072253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)