FastQCFastQC Report
Tue 26 Sep 2023
EGAF00003477281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003477281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88797208
Sequences flagged as poor quality0
Sequence length35-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1477990.16644554860328492No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1220130.13740634728064874No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTT1209230.13617883120829655No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1035770.11664443323488279No Hit
CCAGAAATGACATCACAGTATGTGCCAGCAGGAAGACCAGTTTGCAAAGTT986200.11106205050951602No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGC923960.10405282112023162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)