FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003477333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003477333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49874253
Sequences flagged as poor quality0
Sequence length25-51
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4020890.8062055586075645No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTT1186960.2379905319083175No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTG862560.17294695120546466No Hit
CTCAGTTCGACGAGGATGACGGTATAGAGTTTTCACTCATTTTGTTCAGCT537000.10767078556544998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)