FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003477334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003477334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49874253
Sequences flagged as poor quality0
Sequence length25-51
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4478900.8980385129778284No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATTC914570.18337517756907556No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACT774220.15523440521505155No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT658120.13195586107324755No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTG585620.11741930250063093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)