FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003477352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003477352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57397153
Sequences flagged as poor quality0
Sequence length25-51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG1776890.3095780726267033No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTG730000.12718400858662798No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA658090.11465551261749864No Hit
CCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA621260.10823881804729932No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG618450.10774924672657545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)