FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003478608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003478608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17342652
Sequences flagged as poor quality0
Sequence length126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC827600.47720498571960046No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN284910.16428283286777592No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA247180.14252722132693432No Hit
CCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACC237580.13699173575067988No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC236200.1361960096990933No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG191580.11046753403112743No Hit
CTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAG174400.10056132130195543No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)