FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003490725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003490725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2724354
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCAAGCAGTACTCCCAGCTTCACTTCTTCGATCACCACCACCGACTCG70190.25763905865390474No Hit
CTTCTTTGATCACCACCACGGAGACCACCTCACACAGTACTCCCAGCTTC69740.25598729093208883No Hit
CCCAGCTTCACTTCTTTGATCACCACCACGGAGACCACCTCACACAGTAC55190.20258013459337515No Hit
CCTCACACAGTACTCCCAGCTTCACTTCTTTGATAACCACCTCTGAGACC50870.18672316446394266No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT50190.18422715990653196No Hit
CTCACACAATACTCCCAGCTTCACTTCTTCGATCACCACCACCGAGACCA47370.1738760821831524No Hit
GTTGTCTTGAACAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTAT43300.15893676078806207No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA43240.15871652509181994No Hit
CTTCTTCAATCAGGACCACTGAGACCACCTCTCATAGTACTCCCAGCTTC42900.15746852281311458No Hit
CCTCACACAATACTCCCAGCTTCACTTCTTCGATCACCACCACCGAGACC42020.1542383992682302No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC41990.15412828142010912No Hit
TGTTATTCGACTCCTTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCC40250.1477414462290877No Hit
GGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGAC39450.14480497027919279No Hit
CCACCACCGAGACCACATCCCACAGTACTCCCAGCTTCACTTCTTTGATC37550.1378308398981924No Hit
TCTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTC36600.13434377470769215No Hit
CCACCACCGAGACCCCCTCAAGCAGTACTCCCAGCTTCACTTCTTCGATC36040.13228824154276575No Hit
TGTTATTCAACTCCTTCCAGTTGTCTTGAACAGCCTGACTCCTGCCAGCC34440.1264152896429759No Hit
CTCAGCTCCACCCTCAGCAGATGATAATATCAAGACACCTGCCGAGCGTC34340.12604823014923905No Hit
CTTCTTCAATCACCACCACTGAGACCACCTCACACAATACTCCCAGCTTC34110.12520399331364426No Hit
CTCACACAGTACTCCCAGCTTCACTTCTTTGATAACCACCTCTGAGACCC34050.12498375761740214No Hit
CCACAACCGAGACCACTTCACACAGTACTCCCAGCTTCACTTCTTCAATC33980.12472681597178635No Hit
CCACCACCGACTCGATCGTCACCACCGAGACCACATCCCACAGTACTCCC33270.1221206935662546No Hit
GTTATCTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTAC33030.12123975078128613No Hit
AGAAGATCAAAGAAGGAAAGAAGAAGGGGAAGAAAAGAAGGGGAAGAAGA32840.1205423377431861No Hit
GGGGAAGAAAAGAAGGGGAAGAAGATCAAAACCCACCATGCCCCAGGCTC32300.11856021647700703No Hit
AGAAGATCAAAACCCACCATGCCCCAGGCTCAGCAGGGAGCTGCTGGATG32170.1180830391351491No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT32160.11804633318577543No Hit
CTTGAACTGACTGACTCATGCCAGCCCTACAGAAGTGCCTTTTATGTATT31550.11580727027398054No Hit
CCACCACTGAGACCACCTCACACAATACTCCCAGCTTCACTTCTTCGATC30860.11327455976719619No Hit
GTTGTCTTGAACTGACTGACTCATGCCAGCCCTACAGAAGTGCCTTTTAT29900.1097507886273223No Hit
CTTCAATCAGGACCACTGAGACCACCTCTCATAGTACTCCCAGCTTCACT29740.10916349343734331No Hit
CCATCACTGAGACCACCTCACACAGTACTCCCAGCTACACTACCTCAATC29260.10740160786740637No Hit
CTTGAACAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTATGCATT29000.10644725318369051No Hit
CTTTGATCACCACCACGGAGACCACCTCACACAGTACTCCCAGCTTCACT28730.10545619255060099No Hit
TGTTATTCAACTCCTTCAGGTTGTCTTGAACTGACTGACTCATGCCAGCC28440.1043917200187641No Hit
GCCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCCA28280.10380442482878509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)