FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003490761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003490761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2001683
Sequences flagged as poor quality0
Sequence length101
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCACACAACAGCGTTCCCTGACAGCACCACCACCTCAGGCCTCAGTCAG42840.21401990225225473No Hit
CTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCT38960.19463621362623354No Hit
CAACACTCTCACCTGCCAGCACGACAAGCTCAGGCGTCAGTGAAGAATCC34980.1747529453964489No Hit
CAACCTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACA34550.17260475310026613No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT27560.13768413879720215No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC26910.13443687137273985No Hit
CCACCACCTCAGGCCCCAGTCAGGAATCAACAACTTCCCACAGCAGCCCA26180.13078994026526677No Hit
CCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCC25900.12939111737472916No Hit
CAACCTCTGGTCCTGGAAGTACTCCCAGCCCTGTTCCCACCACCAGCACA23570.11775091260704117No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT23420.11700154320139604No Hit
CACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACG23300.11640204767687991No Hit
GGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCTCTGCTCCTAC22550.11265520064865417No Hit
CCACAACCTTGGGCCGTAGTGAGGAATCGACAACAGTCCACAGCAGCCCA22080.11030717651096603No Hit
TCTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTC21470.10725974092800908No Hit
AGAACCTACCAGCTACCACAGCAGCCCGGGCTCAACTGCAACAACACACT21420.10700995112612736No Hit
CTCAGCTCCACCCTCAGCAGATGATAATATCAAGACACCTGCCGAGCGTC21010.1049616747506973No Hit
CAACCTCTGGTCCTGGAACTTCTCTCAGCCCTGTTCCCACCACGAGCACA20650.10316318817714892No Hit
CACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACGCCA20640.10311323021677259No Hit
CTGAAATAACAACGTTACCTGGCAGTACCACAACACCAGGCCTCAGTGAG20500.10241381877150377No Hit
CAACACCCTCATCTGCCCACTCCACAACCTCAGGTCGTGGAGAATCTACA20240.10111491180171885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)