FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003490768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003490768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2471951
Sequences flagged as poor quality0
Sequence length101
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGG67550.2732659344784747No Hit
GGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGG64300.2601184246775118No Hit
GTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGATGCTGAGGAAGTGT62280.2519467416627595No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTGACCTGAGGATGCTGAGGAAGGGC58120.23511792911752702No Hit
GTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGTGT54830.2218086038113215No Hit
GTGTGACCTGAGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGT51290.2074879315973496No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTGACCTGTAGATGCTGAGGAAGGGC49430.19996351060356776No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGC45420.18374150620299512No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATGCTGAGGAAGGGC44880.18155699688221977No Hit
GCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCTGAGGAAGTGT44340.1793724875614444No Hit
CTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC44170.17868477166416324No Hit
CTGCTGAGGGTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAA43570.17625753908552394No Hit
GGCGTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGG41020.16594180062630692No Hit
GTCGGTGACAGGAAGAGGGGTGGCGTGACCGGTGGATGCTGAGGAAGTGC39000.1577701176115546No Hit
GTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAG38470.15562606216708988No Hit
GTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGT38390.15530243115660464No Hit
CTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCCTTCTTTTCAA38350.15514061565136203No Hit
CTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCT37530.1518233977938883No Hit
GGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGG36070.1459171318525327No Hit
CCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGA35990.14559350084204745No Hit
CTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGATGCT35560.14385398416068926No Hit
GTCGGTGACAAGAAGAGGGGTGGTGTCACCTGTGGATACTGAGGAAAGGC34520.13964678102438116No Hit
CTGCTGTTGATGCATGTGAGGTTGGCCAAGTGTCTGGACTAGGTGTTGGC33930.1372600023220525No Hit
CAGGAAGAGAGGTGGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACA33070.13378096895933617No Hit
GTGGAAGCGGCCCCCGCAGACGCTCGGCAGGTGTCTTGATATTATCATCT32660.13212236003059932No Hit
CTTCTTTTCAATTTCTCCCACGTCAAGAGAAAAGCCAACATGTTTTTCCT32210.13030193559661984No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAAGGC31520.12751061813118464No Hit
GGCCTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGG31200.12621609408924367No Hit
GGGGTGGTGTCACCTGTGGATGCTGAGGAAAGGCTGGTGACAGGAAGAGG30220.1222516142107995No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG29870.12083572853992657No Hit
GTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGTGT28240.1142417467012898No Hit
GTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTG27790.11242132226731033No Hit
GGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCTGAGGAAGTG27500.11124815985430131No Hit
GTCCTTTTTAATTCTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCT27420.11092452884381608No Hit
GTCGGTGACAGGAAGAGAGGTGGTGTGACCTGAAGATGCTGAGGAAGGGA27320.11051999008070952No Hit
CTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCT27110.10967045867818577No Hit
CTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTGACCTGTAGATGCT26230.10611051756284813No Hit
GGGTGGTGTCACCTGTGGATGCTGAGGAAAGGCTGGTGACAGGAAGAGGG26160.10582734042867353No Hit
GTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGCGT26120.10566552492343093No Hit
CAGGAAGAGAGGTGGCGTGACCTGTGGATGCTGAGGAAGTGTCGGTGACA26110.10562507104712027No Hit
GTGGGTTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTC26080.1055037094181883No Hit
GTCGGTGACAGGAAGACGGGTGGTGTCACCTGTGGAAGCTGAGGAAAGGC25930.10489690127352849No Hit
CTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGGGCT25770.104249639252558No Hit
GGTGGCGTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGG25710.10400691599469407No Hit
GGTGGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGG25710.10400691599469407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)