FastQCFastQC Report
Sat 10 Sep 2022
EGAF00003490805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003490805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2637034
Sequences flagged as poor quality0
Sequence length101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGTCACC65920.24997781598568694No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC62880.23844971282129845No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT62870.23841179142931038No Hit
CCACAGGTCACGCCACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCC53740.2037895605441568No Hit
CTCAGCTCCACCCTCAGCAGATGATAATATCAAGACACCTGCCGAGCGTC49900.18922774602071873No Hit
TGTTATTCGACTCCTTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCC49430.18744544059727708No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT47430.1798611621996531No Hit
CACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTCACGCCA46920.17792717120825896No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA43490.16492013375633383No Hit
CACCACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTCACG42240.16017995975781882No Hit
CCACAGGTCACGCCACCCCTCTTCATGTCACCAGCCCTTCCTCAGCATCC41220.15631197777503059No Hit
CCACAGGTGACACCACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCC39850.15111674707265815No Hit
TGTTATTCAACTCCTTCCAGTTGTCTTGAACAGCCTGACTCCTGCCAGCC38470.1458835949782976No Hit
TGATAATCTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCT37740.14311533336316482No Hit
CTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTACTCATT37690.14292572640322423No Hit
GTCACCGACACTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGT37240.14121926376375885No Hit
CCGACACTTCCTCAGCATCCACAGGTGACACCACCCCTCTTCCTGTCACC35740.13553105496554085No Hit
CGCCACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTCACG35650.13518976243764774No Hit
CCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCC34910.13238357943052687No Hit
CCACAGGTCACGCCACCCCTCTTCTTGTCACCGACACTTCCTCAGCATCC34860.13219397247058626No Hit
GTTATCTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTAC34180.12961531781539412No Hit
TCTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTC33970.12881896858364358No Hit
CCACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCC31760.12043834095426909No Hit
CACCACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTGACA31190.11827682161094624No Hit
CACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTGACACCA31180.11823890021895812No Hit
CACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACA31110.11797345047504126No Hit
CTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCA30590.11600153809165903No Hit
CACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACG29660.11247484863676387No Hit
GGGGAAGAAAAGAAGGGGAAGAAGATCAAAACCCACCATGCCCCAGGCTC29610.11228524167682327No Hit
CGACACTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGTCACCG29320.11118552130916778No Hit
CTGCGGGGGCCGCTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTC28980.10989619398157173No Hit
CCACAGGTCAGGCCATCCCTCTTCCTGTCACCAGCCCTTCCTCAGCATCC28750.10902400196584497No Hit
CCGACACTTCCTCAGCATCCACAGGTCAGGCCACCCCTCTTCCTGTCACC27200.10314618620768637No Hit
GTTGTCTTGAACAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTAT26860.10185685888009029No Hit
GTCTGCGGGGGCCGCTTCCACCCTCAGCGGATGATAATCTCAAGACACCT26550.10068129572845858No Hit
CGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTCACG26450.10030208180857737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)