FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003490830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003490830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1876555
Sequences flagged as poor quality0
Sequence length101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATT264631.4101904820269058No Hit
GACCGACTGACCCATGTTCAACTGCTGTTCACATGGAACCCTTCTCCACT220711.1761445840915934No Hit
CACTCCTTAGCGGATTCCGACTTCCATGGCCACCGTCCTGCTGTCTATAT148790.7928890973086321No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCAC97180.5178638515790904No Hit
CACACTCCTTAGCGGATTCCGACTTCCATGGCCACCGTCCTGCTGTCTAT86400.46041815987274554No Hit
GCCGACTTCCCTTACCTACATTGTTCCAACATGCCAGAGGCTGTTCACCT80670.42988348329785164No Hit
CCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTACCCATTTAAAGTT71580.3814436560612399No Hit
GGACCGACTGACCCATGTTCAACTGCTGTTCACATGGAACCCTTCTCCAC70950.37808644031216776No Hit
GGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCAAGAATTTCACC68060.3626858791775354No Hit
ACACTCCTTAGCGGATTCCGACTTCCATGGCCACCGTCCTGCTGTCTATA58840.3135532931355596No Hit
ACACACTCCTTAGCGGATTCCGACTTCCATGGCCACCGTCCTGCTGTCTA52100.27763641353437546No Hit
GGACCGCTACGGACCTCCACCAGAGTTTCCTCTGGCTTCGCCCTGCCCAG50210.2675647662871592No Hit
GCCCTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATT41070.2188584933561766No Hit
CCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGC39400.20995920716419184No Hit
CTGCTGTTGATGCATGTGAGGTTGGCCAAGTGTCTGGGCTGGGTGTCGGC32060.17084497923055814No Hit
AGTGGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATT31630.1685535462589692No Hit
ATTCGCTTTACCGGATAAAACTGCGTGGCGGGGGTGCGTCGGGTCTGCGA31070.16556935448201623No Hit
GGCCGACTGACCCATGTTCAACTGCTGTTCACATGGAACCCTTCTCCACT26150.13935109815592933No Hit
GGTGTCTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACG25410.13540770187924148No Hit
CTCCACTTCGGCCTTCAAAGTTCTCGTTTGAATATTTGCTACTACCACCA25380.135247834462619No Hit
CTGCTGAGGGTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAA25380.135247834462619No Hit
GTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAG25210.13434191910175827No Hit
CTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTAT24780.13205048613016937No Hit
CGGCCTTCAAAGTTCTCGTTTGAATATTTGCTACTACCACCAAGATCTGC24300.12949260746420968No Hit
GTAGGAGCAGAGGTTGTGCTGGTGGTGGGAACAGGGCTGGGAGTAGTTCC23940.1275741984647399No Hit
CTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCCTTCTTTTCAA23840.1270413070759983No Hit
CTCGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTC23440.12490974152103189No Hit
CCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGA22940.12224528457732388No Hit
GTGGGTTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTC22670.12080647782772155No Hit
GCTGGTTGTAGGAGCAGAGGTTGTGCTGGTGGTGGGAACAGGGCTGGGAG21440.11425191374619982No Hit
CACCTTCATTGCGCCACGGCGGCTTTCGTGCGAGCCCCCGACTCGCGCAC20940.11158745680249181No Hit
CTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGG20920.11148087852474349No Hit
GTGCTGGTGGTGGGAACAGGGCTGGGAGTAGTTCCAGGACCAGAGGTTGT20650.11004207177514114No Hit
GGCAGAGGTTGTGCTGGTTGTAGGAGCAGAGGTTGTGCTGGTGGTGGGAA20260.10796379535904889No Hit
CCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCG19450.1036473751102419No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCCA19450.1036473751102419No Hit
GGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGC19380.10327435113812278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)