FastQCFastQC Report
Wed 11 May 2022
EGAF00003490870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003490870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9500817
Sequences flagged as poor quality0
Sequence length101-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG208800.21977057341489686No Hit
GTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTG194050.20424559277375828No Hit
GGCGGACTTTGGAGTGGGAAGCGGGGAATGTCTACGTGCGTATGCACGTG192900.2030351705542797No Hit
CTGCTGAGGGTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAA185760.19552002738290825No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC147180.15491299327205227No Hit
GTGGAAGCGGCCCCCGCAGACGCTCGGCAGGTGTCTTGATATTATCATCT124920.13148342926718828No Hit
GTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTG123520.13000987178260565No Hit
CTCTGCTCCTCTCCAGAAGGTACCACCACAGCTGCCCACTTCTGGAAGGT110380.11617948224873713No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT102260.10763284883815781No Hit
GTGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGT97220.1023280418936603No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)