FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003491287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003491287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3594219
Sequences flagged as poor quality0
Sequence length101
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACAGGTGACACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCC97360.2708794316651267No Hit
CCGACACTTCCTCAGCATCCACAGGTCAGGCCACCCCTCTTCCTGTCACC95410.26545405274414274No Hit
CACCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACG82760.23025864589775968No Hit
CCAGCCTTTCCTCAGTATCCACAGGTGACACCACGCCTCTTCCTGTCACT73350.20407771479701153No Hit
CCACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACGCC71340.19848540113999733No Hit
CCACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCC64730.18009475772066197No Hit
GGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCCACAGG63930.17786896124025833No Hit
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCCTGTCACC63710.17725686720814732No Hit
CCGACACTTCCTCAGCATCCACAGGTGACACCACCCCTCTTCCTGTCACC60810.169188354966684No Hit
TGTTATTCAACTCCTTCCAGTTGTCTTGAACAGCCTGACTCCTGCCAGCC56330.15672389467642345No Hit
TCCACAGGTCAGGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATC51710.14386992000209226No Hit
CACGCCTCTTCCTGTCACTAGCCCTTCCTCAGCATCCACAGGTCACGCCA51510.14331347088199134No Hit
GGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGTATCCACAGG50950.14175541334570876No Hit
CCGACACTTCCTCAGCATCCACAGGTCACGCCACCTCTCTTCCTGTCACC49510.13774897968098215No Hit
CGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTCACG48320.1344381074163817No Hit
CACCACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTCACG46810.13023691655961978No Hit
TGTTATTCGACTCCTTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCC46200.12853974674331198No Hit
CGACACTTCCTCAGCATCCACAGGTCAGGCCACCCCTCTTCCTGTCACCA42770.11899664433358123No Hit
CTTCCTCAGCATCCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACT42750.11894099942157114No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT41950.11671520294116748No Hit
ATGTTATTCAACTCCTTCCAGTTGTCTTGAACAGCCTGACTCCTGCCAGC41600.11574141698099086No Hit
CCAGCCTTTCCTCAGTATCCACAGGTGACACCACCCCTCTTCCTGTCACC41270.11482327593282435No Hit
CACCCCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGGTCACGCCA40610.11298699383649133No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA40550.11282005910046104No Hit
CCACAGGTCACGCCACCTCTCTTCTTGTCACCGACGCTTCCTCAGTATCC40400.11240272226038536No Hit
CCACCCCTCTTCCTGTCACCAGCCCTTCCTCAGCATCCACAGGTGACACC40260.1120132078763147No Hit
GGCCACCCCTCTTCCTGTCACCAGCCTTTCCTCAGTATCCACAGGTGACA39910.11103942191613811No Hit
CCACAGGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGTATCC38040.10583662264319453No Hit
GGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGAC37720.10494630405103306No Hit
GGTCACGCCACCTCTCTTCCTGTCACCGACACTTCCTCAGCATCCACAGG36450.10141285213839224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)