FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003491596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003491596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4564887
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA56974112.480944216143795No Hit
CCTCTCCCCTGGTGCTGATCGTGACTGGGTTTCCAGCCAGGAGAAAGATC542101.1875430870468426No Hit
CCTCTCCCCTGGTGCTGATCATGGGTTTCCAGCCAGGAGAAAGATCGGAA339580.7438957415594296No Hit
CCTCTCCCCTGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA298080.6529844002710253No Hit
CCGCTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA276330.6053380948969821No Hit
CCTCTCCCCTGGTGCTGATCCCCATACCTATTTCACAGTGCTGCCCTCCG265060.5806496414916732No Hit
CCTCGCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA258240.5657095126341571No Hit
CCTCTCCCCTGGTGCTGATCAGGGTTTCCAGCCAGGAGAAAGATCGGAAG237560.520407186421044No Hit
CCTCTCCCCTGGTGCTGATCGGGTTTCCAGCCAGGAGAAAGATCGGAAGA222970.48844582571266276No Hit
CTCTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA218100.47777743457833677No Hit
CCTCTCCCCTGGTGCTGATCCAGGGTTTCCAGCCAGGAGAAAGATCGGAA164100.35948315916691914No Hit
CCTCTCCCCTGGTGCTGATCGGAGGTCCTTGGGCAGCATCAGTCAAAGCA144950.3175325040904627No Hit
CCTCTCCCCTGGTGCTGACCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA144470.31648099942013896No Hit
CCTCTCCCCTGGTGCTGATCCAGTCACGGGTTTCCAGCCAGGAGAAAGAT135650.29715960110294076No Hit
CCTCTCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA131210.28743318290244646No Hit
GCTCTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA95210.208570332628168No Hit
CCTCCCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA89470.19599608927888026No Hit
CCTCTCCCCTGGTGCTGATCCATGGGTTTCCAGCCAGGAGAAAGATCGGA84690.18552485527023999No Hit
CCTCTCCCCTGGTGCTGATCACGGGTTTCCAGCCAGGAGAAAGATCGGAA81510.1785586368293454No Hit
CCGCGCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA77250.16922653288022244No Hit
CCTCTCCCCTGGTGCTGATCCGGGTTTCCAGCCAGGAGAAAGATCGGAAG71780.1572437609079918No Hit
CCCCTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA64840.1420407558828948No Hit
CCTCTCCCCTGGTGCTGATCCACGGGTTTCCAGCCAGGAGAAAGATCGGA64580.14147119085313611No Hit
CCTCTCCCCTGGTGCTGATCTGGGTTTCCAGCCAGGAGAAAGATCGGAAG63500.13910530534490778No Hit
CCTCTCCCCTGGTGCTGATCGTGACGGGTTTCCAGCCAGGAGAAAGATCG61900.13560028977716204No Hit
CCTCACCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA61180.1340230327716765No Hit
CCTCTCCCCTGGTGCTGATCGTGACTGGGTTCCAGCCAGGAGAAAGATCG61020.13367253121490194No Hit
CCTCTCCCCTGGTGCTGATCATTCAGGGTTTCCAGCCAGGAGAAAGATCG58970.12918173001872774No Hit
CCTTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA56720.12425280187658534No Hit
CCTCTCCCCTGGTGCTGATCTGACTGGGTTTCCAGCCAGGAGAAAGATCG54770.11998106415339527No Hit
CCTCTCCCCTGGTGTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA54550.11949912451283022No Hit
CCTCTCCCCTGGTGCTGATCGGGGTTTCCAGCCAGGAGAAAGATCGGAAG52210.11437303924500211No Hit
CCTCTCCCCTGGTGCTGATCCAGTCAGGGTTTCCAGCCAGGAGAAAGATC51430.11266434415572608No Hit
CCTCTCCCCTGGTGCTGATCGTGACTGGGTTTCAGCCAGGAGAAAGATCG50640.11093374271915164No Hit
CCTCTCCCCTGGTGCTGATCGTGCTGGGTTTCCAGCCAGGAGAAAGATCG47670.10442755757152367No Hit
CCTCTCCCCTGGTGCTGATCTCATGGGTTTCCAGCCAGGAGAAAGATCGG47000.10295983230253017No Hit
CCTCTCCCCTGGTGCTGATCGTGGGTTTCCAGCCAGGAGAAAGATCGGAA46240.10129494990785096No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)