FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003491598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003491598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5442245
Sequences flagged as poor quality0
Sequence length126
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA86702015.931293060125004No Hit
CCTCTCCCCTGGTGCTGATCGTGACTGGGTTTCCAGCCAGGAGAAAGATC709191.3031203115625996No Hit
CCTCTCCCCTGGTGCTGATCATGGGTTTCCAGCCAGGAGAAAGATCGGAA539820.9919068325663398No Hit
CCTCTCCCCTGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA472550.8682997549724424No Hit
CCTCTCCCCTGGTGCTGATCAGGGTTTCCAGCCAGGAGAAAGATCGGAAG353170.6489417510604539No Hit
CCTCTCCCCTGGTGCTGATCGGGTTTCCAGCCAGGAGAAAGATCGGAAGA309710.5690850007671466No Hit
CTCTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA302940.5566452814968823No Hit
CCTCTCCCCTGGTGCTGATCGGAGGTCCTTGGGCAGCATCAGTCAAAGCA274940.5051959255785067No Hit
CCTCTCCCCTGGTGCTGATCCAGTCACGGGTTTCCAGCCAGGAGAAAGAT253560.46591066738083275No Hit
CCTCTCCCCTGGTGCTGACCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA238890.43895487983359804No Hit
CCTCTCCCCTGGTGCTGATCCAGGGTTTCCAGCCAGGAGAAAGATCGGAA236990.4354636735391369No Hit
CCGCTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA213140.3916398471586634No Hit
CCTCTCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA212930.3912539769892756No Hit
CCTCTCCCCTGGTGCTGATCCCCATACCTATTTCACAGTGCTGCCCTCCG199540.3666501599983095No Hit
CCTCTCCCCTGGTGCTGATCATTCAGGGTTTCCAGCCAGGAGAAAGATCG198610.3649413063910206No Hit
CCTCTCCCCTGGTGCTGATCCATGGGTTTCCAGCCAGGAGAAAGATCGGA141250.25954362583823404No Hit
CCTCTCCCCTGGTGCTGATCCGGGTTTCCAGCCAGGAGAAAGATCGGAAG99140.18216746949099133No Hit
CCTCTCCCCTGGTGTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA94830.17424794363355564No Hit
CCTCTCCCCTGGTGCTGATCACGGGTTTCCAGCCAGGAGAAAGATCGGAA94630.17388044823413867No Hit
CCTCTCCCCTGGTGCTGATCCACGGGTTTCCAGCCAGGAGAAAGATCGGA93280.1713998542880741No Hit
CCTTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA86790.15947462857699352No Hit
CCTCTCCCCTGGTGCTGATCCAGTCAGGGTTTCCAGCCAGGAGAAAGATC83200.15287808615745893No Hit
CCTCTCCCCTGGTGCTGATCGTGACTGGGTTCCAGCCAGGAGAAAGATCG83030.1525657150679545No Hit
CCTCTCCCCTGGTGCTGATCTCCAGCGGAGGGGACCCAACAGCGTCTGGA79110.14536280523938191No Hit
CCTCTCCCCTGGTGCTGATCGTGACGGGTTTCCAGCCAGGAGAAAGATCG78990.1451423079997317No Hit
CCTCTCCCCTGGTGCTGATCACATGGGTTTCCAGCCAGGAGAAAGATCGG74110.13617542025395768No Hit
CCTCTCCCCTGGTGCTGATCGGGAAAAGGGAGGAGCTGAGGATTCAGAAT73670.13536693037524036No Hit
CCTCTCCCCTGGTGCTGATCTGGGTTTCCAGCCAGGAGAAAGATCGGAAG66890.12290883633500514No Hit
CCTCTCCCCTGGTGCTGATCGTGACTGGGTTTCAGCCAGGAGAAAGATCG66710.12257809047552985No Hit
CCCCTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA64530.11857239062188489No Hit
CCTCTCCCCTGGTGCTGATCATTTGAGGTCAGGAGTTCAAGACCAGCCTG63440.11656954069506242No Hit
CCTCTCCCCTGGTGCTGATCTGACTGGGTTTCCAGCCAGGAGAAAGATCG63410.11651441638514987No Hit
CCTCTCCCCTGGTCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA62980.1157243012764034No Hit
CCTCTCCCCTGGTGCTGATCGTGATGGGTTTCCAGCCAGGAGAAAGATCG62390.11464018984812334No Hit
TCTCTCCCCTGGTGCTGATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCA61820.113592827959785No Hit
CCTCTCCCCTGGTGCTGATCGTGCTGGGTTTCCAGCCAGGAGAAAGATCG60820.11175535096270013No Hit
CCTCTCCCCTGGTGCTGATCGGGGTTTCCAGCCAGGAGAAAGATCGGAAG58000.10657366583092089No Hit
CCTCTCCCCTGGTGCTATCAGAGGTCCTTGGGCAGCATCAGTCAAAGCAA55250.10152060408893757No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)