FastQCFastQC Report
Wed 11 May 2022
EGAF00003492740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003492740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29043415
Sequences flagged as poor quality0
Sequence length35-51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2477580.8530608401250336No Hit
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA564050.1942092553509978No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAATG306820.1056418468695916No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)