FastQCFastQC Report
Thu 16 May 2024
EGAF00003593468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003593468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75472260
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGATCTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATGA985200.13053802814438048No Hit
TAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATGAAACTCCC941030.12468554671610468No Hit
GGAAGATCTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATG850020.11262681149338843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)