FastQCFastQC Report
Mon 13 May 2024
EGAF00003593470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003593470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85008267
Total Bases6.3 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGATCTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATGA1537190.18082829520568866No Hit
TAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATGAAACTCCC1128660.1327706162978243No Hit
GGAAGATCTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATG1019930.119980095582939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)