FastQCFastQC Report
Thu 16 May 2024
EGAF00003593472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003593472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73665727
Total Bases5.5 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGATCTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATGA1420670.19285359119580806No Hit
TAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATGAAACTCCC1237440.1679804232434983No Hit
GGAAGATCTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATG1041510.14138325139993527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)