FastQCFastQC Report
Wed 15 May 2024
EGAF00003593480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003593480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78191700
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGATCTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATGA1701200.21756784927300468No Hit
TAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATGAAACTCCC1166230.1491501016092501No Hit
GGAAGATCTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATG1112630.14229515408924476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)