FastQCFastQC Report
Wed 8 May 2024
EGAF00003593490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003593490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9873274
Total Bases740.4 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACAGTGATCTCGTA446460.45219042842323626Illumina Paired End PCR Primer 2 (97% over 37bp)
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG329310.3335367781751018Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)