FastQCFastQC Report
Mon 3 Apr 2023
EGAF00003599883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176715442
Sequences flagged as poor quality0
Sequence length27
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCTTCCAGTTTTCCACTTCAAAN3815030.21588549120681827No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNN2007540.11360297534156637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)