FastQCFastQC Report
Wed 8 Mar 2023
EGAF00003599892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145006191
Sequences flagged as poor quality0
Sequence length42-56
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4834940.3334299016239934No Hit
CACCTGACCAACCTCCACAGGCTGGGTGGCCCGGAGGCTGGGCTGGGCGAGTAT1645500.11347791350508614No Hit
CTCACTTCCTAGATGAGGAAGTGAAGCTTATCAAGAAGATGGGTGACCACCTGAC1469490.1013398110705494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)