FastQCFastQC Report
Sat 13 May 2023
EGAF00003599907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118865014
Sequences flagged as poor quality0
Sequence length20-26
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNN99107548.337822599339448No Hit
GGGGCAGTTCGGCGGTCCCG10462330.8801858215403904No Hit
GGGCTAAACCTAGCCCCAAA7046080.5927799747703727No Hit
GGGGCTAAACCTAGCCCCAAA6760970.5687939430184226No Hit
GGGGCGCAATAGATATAGTA5394910.45386862108980186No Hit
GGGCGCGACCTCAGATCAGA4023800.3385184474886782No Hit
GGGATTCCTGAAGCTGACAG3997750.33632688589091486No Hit
GGGAGACGTTCTTCGCCGAGA2820800.2373112074844832No Hit
GGGAGATGCACAGGAGGAGAA1522010.1280452463497796No Hit
GGGGACAACCTTAGCCAAAC1418800.11936228771234571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)