FastQCFastQC Report
Thu 23 Mar 2023
EGAF00003599913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences236986858
Sequences flagged as poor quality0
Sequence length21
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTGTCTCTTATACACATC33966421.4332617549619566No Hit
CTGTCTCTTATACACATCTCC15003150.633079408985624No Hit
GGGCGCGACCTCAGATCAGAC14608170.6164126620050805No Hit
GGGATTCCTGAAGCTGACAGC12501280.52750941995273No Hit
GGGAACTCGGTGGTGGCCACT7139520.3012622750583072No Hit
GGGGCTAAACCTAGCCCCAAA6981250.2945838456578044No Hit
GGGATGTCTCTTGTCAGCTGT6158750.2598772797772609No Hit
GGGCTCTCGGCCTTAGCGCCA5929060.25018518115464444No Hit
GGGCTAAACCTAGCCCCAAAC5793170.2444511079175538No Hit
GGGGCCTGTCTCTTATACACA5397560.2277577771844209No Hit
GGGGCAGTTCGGCGGTCCCGC5276960.22266888740303062No Hit
GGGGCGCAATAGATATAGTAC5194060.21917080313373327No Hit
GGGAGCTGTCTCTTATACACA4829580.20379104734997586No Hit
GGGCTCTTCCGGGGACGTTGT4729330.19956085497365425No Hit
GGGCTCTTCCACAGGAGGCCT4558280.1923431551634817No Hit
GGGCTCTTTTCCGTGGCGCCT4385280.18504317230958015No Hit
GGGCTTTTCCAAGCGGCTGCC4157960.17545107923241887No Hit
GGGCCTTTCCGGCGGTGACGA3777620.15940208802633266No Hit
TCCTGTCTCTTATACACATCT3427670.14463544640943762No Hit
GGGCTCTTTCCGGTGTGGAGT3403720.1436248418467154No Hit
GGGCTCTTTCCCTGCCGCCGC3380970.142664873003211No Hit
GGGTAGAATCTTAGTTCAACT3289080.13878744280410688No Hit
GGGAGGCATTGAGGCAGCCAG3270290.13799457183402128No Hit
GGGCTTTTCGATCCGCCATCT3186780.1344707477407882No Hit
GGGCTCTGTCTCTTATACACA3161380.13339895835067783No Hit
GGGAGACGTTCTTCGCCGAGA3045500.1285092357315442No Hit
GGGCTCTACCGGCGGGATTTG2893910.12211267850135386No Hit
GGGCTCTTTCCGCCATCTTTC2874910.12131094628040513No Hit
GGGGACAACCTTAGCCAAACC2872220.12119743787649187No Hit
GGGCTCTTTCCCTTCGGTGTG2868910.12105776768431607No Hit
GGGGACTGTCTCTTATACACA2792470.1178322723701413No Hit
GGGACCGCCGAGACCGCGTCC2715280.11457512973145541No Hit
GGGCTCTTCCCTTTTGCGGCC2629200.11094286080623086No Hit
GGGCCTTTCGGCCGGAACCGC2623140.11068715042418091No Hit
GGGAGATTCTCCCCAGACGCC2616030.11038713378781537No Hit
GGGCTCTTCCTGCTCTCCATC2603200.10984575355651156No Hit
GGGACCTGTCTCTTATACACA2599450.10968751693395588No Hit
GGGCCCTTTCCCCTGGCTGGC2598500.10964743032290845No Hit
GGGAAAACACTCTGTGTGGCT2580090.10887059399724182No Hit
GGGGACAACTCGGTGGTGGCC2553080.1077308683505142No Hit
GGGGTCTGTCTCTTATACACA2437400.1028495850179169No Hit
GGGCTCTTTTTCCGGCTGGAA2408110.10161365150467541No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)