FastQCFastQC Report
Mon 6 Feb 2023
EGAF00003599915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474855731
Sequences flagged as poor quality0
Sequence length21
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCTGTCTCTTATACACATC45560350.9594566733785509No Hit
ATGGGGCTAAACCTAGCCCCA37017580.7795542431812832No Hit
CTGTCTCTTATACACATCTCC32153270.6771166040744279No Hit
ATGGGCTGTCTCTTATACACA21524930.4532940974445142No Hit
GTGGGGCTAAACCTAGCCCCA20447250.43059920445605826No Hit
ATGGGCTAAACCTAGCCCCAA12496980.2631742481802331No Hit
ATGGGGGCGCAATAGATATAG11273190.23740242065226333No Hit
GTGGGGCAGTTCGGCGGTCCC10196980.21473848443454924No Hit
GTGGGGGCGCAATAGATATAG8955980.18860423103959548No Hit
ATGGGCGCGACCTCAGATCAG8066260.16986759290054773No Hit
GTGGGCTAAACCTAGCCCCAA7358610.15496517193766374No Hit
ATGGGGCGCAATAGATATAGT7357160.15493463634747626No Hit
GTGGGGCGCAATAGATATAGT5206140.10963624655084979No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)