FastQCFastQC Report
Thu 14 Sep 2023
EGAF00003599919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170168294
Sequences flagged as poor quality0
Sequence length21
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCTGTCTCTTATACACATC30041531.765401138710364No Hit
CTGTCTCTTATACACATCTCC17546551.031129218466514No Hit
ATGGGGCTAAACCTAGCCCCA16475760.968203865286444No Hit
ATGGGGGCGCAATAGATATAG14794390.8693975623919695No Hit
ATGGGCTGTCTCTTATACACA13623570.800593910872727No Hit
ATGGGGCGCAATAGATATAGT8352340.49082821503752044No Hit
ATGGGGCAGTTCGGCGGTCCC3970600.23333371374105685No Hit
ATGGGGGCGACAAACCTACCG3931240.23102070941605607No Hit
ATGGGGACAACCTTAGCCAAA3700510.2174617793371073No Hit
ATGGGCGCGACCTCAGATCAG3315150.194815962602293No Hit
ATGGGCTAAACCTAGCCCCAA2639310.155099985899841No Hit
ATGGGAACTCGGTGGTGGCCA2597220.1526265521590056No Hit
ATGGGGACAACTCGGTGGTGG2126950.124990969234257No Hit
ATGGGGAATCTTAGTTCAACT2009790.11810602038473748No Hit
ATGAAGATTTATAGGTAGAGG1816450.10674432688383183No Hit
GGGCTGTCTCTTATACACATC1745890.10259784352072074No Hit
ATGGGGCTGTCTCTTATACAC1728180.10155710910517797No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)