FastQCFastQC Report
Mon 23 Jan 2023
EGAF00003599931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences590834436
Sequences flagged as poor quality0
Sequence length20-21
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNN9307244315.75271130608237No Hit
ATGGGGCTAAACCTAGCCCCA42553670.7202300239656309No Hit
ATGGGCGCGACCTCAGATCAG35468290.6003084424144838No Hit
ATGGGGGCGCAATAGATATAG22298300.3774035269670707No Hit
ATGGGCTAAACCTAGCCCCAA16704340.28272454992789214No Hit
ATGGGGCGCAATAGATATAGT14059450.23795921739402476No Hit
ATGGGGCAGTTCGGCGGTCC12359070.20917991990568405No Hit
ATGGGGACAACCTTAGCCAAA8977270.15194222700993684No Hit
ATGGGAACTCGGTGGTGGCCA6879240.11643261768174934No Hit
ATGGGGGCGACAAACCTACCG6011930.1017532092526848No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)