FastQCFastQC Report
Tue 26 Sep 2023
EGAF00003599937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133317681
Sequences flagged as poor quality0
Sequence length21
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCTGTCTCTTATACACATC5006170.3755068316857387No Hit
CTGTCTCTTATACACATCTCC3931930.29492937249636075No Hit
ATGGGCTGTCTCTTATACACA3512970.2635036833561484No Hit
ATGGGGCTAAACCTAGCCCCA2691870.20191395318374913No Hit
ATGGGCGCGACCTCAGATCAG2239900.16801222337493255No Hit
ATGGGGGCGCAATAGATATAG1696930.1272846922682371No Hit
ATGGGGACAACCTTAGCCAAA1458530.10940259304390391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)