FastQCFastQC Report
Fri 15 Sep 2023
EGAF00003599939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180011921
Sequences flagged as poor quality0
Sequence length21
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCTGTCTCTTATACACATC25880211.437694229150524No Hit
ATGGGCTGTCTCTTATACACA18113561.0062422477009174No Hit
ATGGGGCTAAACCTAGCCCCA12174860.6763363188596826No Hit
CTGTCTCTTATACACATCTCC9209240.5115905629383289No Hit
ATGGGGGCGCAATAGATATAG7115510.39527993259957483No Hit
ATGGGGACAACCTTAGCCAAA4973320.27627725832668604No Hit
ATGGGGCAGTTCGGCGGTCCC4707400.26150490333359644No Hit
ATGGGAGGAATTTGAAGTAGA3034310.16856161431664296No Hit
ATGGGCTGATGTTCGCCGACC2741480.1522943583275243No Hit
ATGGGGGCAGTTCGGCGGTCC2704810.15025727101706782No Hit
ATGGGTAGAATCTTAGTTCAA2609660.1449715099701647No Hit
ATGGGATGACCCACCAATCAC2423890.13465163787680484No Hit
ATGGGGCGCAATAGATATAGT2422980.13460108566920964No Hit
ATGGGGGCGACAAACCTACCG2282250.12678327009242904No Hit
ATGGGGCTGTCTCTTATACAC2270280.1261183141309847No Hit
ATGGGAATAACGCCGCCGCAT2256890.12537447450494127No Hit
GTGGGGCAGTTCGGCGGTCCC2110240.11722779181940957No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)