FastQCFastQC Report
Thu 16 Mar 2023
EGAF00003599941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences258652311
Sequences flagged as poor quality0
Sequence length21
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGGGGCGCAATAGATATAG32431741.2538739698328079No Hit
ATGGGGCTAAACCTAGCCCCA32086511.2405267084584448No Hit
ATGGGGACAACCTTAGCCAAA17177720.6641239714266463No Hit
ATGCTGTCTCTTATACACATC13992890.5409922666416849No Hit
ATGGGGCGCAATAGATATAGT9884840.3821670860694533No Hit
ATGGGCTGTCTCTTATACACA9379400.3626257953674344No Hit
ATGGGTAGAATCTTAGTTCAA9235950.35707974014583616No Hit
ATGGGATGACCCACCAATCAC7864760.30406687531974147No Hit
CTGTCTCTTATACACATCTCC7621710.2946700909237188No Hit
ATGGGGGCGACAAACCTACCG6978120.26978765327946364No Hit
ATGGGCTGATGTTCGCCGACC6388640.24699721318167536No Hit
ATGGGGAATCTTAGTTCAACT5040790.1948867180235633No Hit
GTGGGGGCGCAATAGATATAG4746890.18352397400385106No Hit
GTGGGGCTAAACCTAGCCCCA3733540.1443458976092427No Hit
ATGGGACAACCTTAGCCAAAC3190570.12335362431770425No Hit
ATGGGATGGCACATGCAGCGC2766670.10696482816269907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)