FastQCFastQC Report
Tue 26 Sep 2023
EGAF00003599947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145835194
Sequences flagged as poor quality0
Sequence length21
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCTGTCTCTTATACACATC8166520.5599827981166192No Hit
ATGGGAATAACGCCGCCGCAT6413030.4397450179275656No Hit
ATGGGCTGTCTCTTATACACA6297960.4318546043145114No Hit
ATGGGGGCGCAATAGATATAG6268960.42986605825751495No Hit
CTGTCTCTTATACACATCTCC3456960.23704566128255705No Hit
ATGGGGAATAATTGCAATCCC3217150.22060175680227093No Hit
ATGGGGCTAAACCTAGCCCCA3127430.21444960672524632No Hit
ATGGGCTGATGTTCGCCGACC2993050.2052350957204473No Hit
ATGGGGGCTTTGGTGACTCTA2823730.1936247295697361No Hit
ATGGGGACAACCTTAGCCAAA2577000.1767063168579184No Hit
ATGGGGGGCCGATCGCACGCC1987460.13628123263579298No Hit
GTGGGGGCGCAATAGATATAG1768750.12128416683835591No Hit
ATGGGGGCGACAAACCTACCG1712460.11742433037117225No Hit
ATGGGAGGAATTTGAAGTAGA1690820.11594046358933084No Hit
GTGGGAATAACGCCGCCGCAT1667010.11430779870598314No Hit
ATGGGGCGCAATAGATATAGT1563910.10723817462059261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)