FastQCFastQC Report
Tue 26 Sep 2023
EGAF00003599953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003599953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142150271
Sequences flagged as poor quality0
Sequence length20-21
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNN107505627.562814987528234No Hit
ATGGGAATAACGCCGCCGCAT5215980.36693422835613165No Hit
ATGGGCGCGACCTCAGATCAG5019940.35314318887228857No Hit
ATGGGGAATAATTGCAATCC3985130.28034628228039044No Hit
ATGGGGCTAAACCTAGCCCCA3268730.2299489108958505No Hit
ATGGGGGCGCAATAGATATAG2141360.1506405851312095No Hit
ATGGGGGCTTTGGTGACTCTA1854390.13045279386066033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)