FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003600011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003600011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9184297
Sequences flagged as poor quality0
Sequence length0-121
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTCTGCACATGTTACAATCAAAACCAATGTCTGCTACATTTTCCACT171440.18666643728964774No Hit
GGACTCTGAAATGACTCCTACAATTGAGGGTTGTGTGAAAGATGTTTCAT162770.17722641155877256No Hit
TATGTCTGCTGATAATGAAAATGATGACTCTGTCTCAGATGATAACTTTA133640.14550923168098767No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG122240.1330967411005981TruSeq Adapter, Index 7 (97% over 35bp)
ACAGATCACTAAAGTGGTTCTTAGCAAAGGTTGGAGGTGTCTTGAGTGCA94290.10266436287937987No Hit
CAGAGCTGCCTTCAGTATGATTATCTAGCAAGTTCTTCATTATAGCTATG92020.10019275291293389No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)