FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003600022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003600022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9803741
Sequences flagged as poor quality0
Sequence length0-121
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTCTGCACATGTTACAATCAAAACCAATGTCTGCTACATTTTCCACT142840.14569948349308698No Hit
GGACTCTGAAATGACTCCTACAATTGAGGGTTGTGTGAAAGATGTTTCAT127810.1303686011288956No Hit
ACAGATCACTAAAGTGGTTCTTAGCAAAGGTTGGAGGTGTCTTGAGTGCA98670.10064525368428236No Hit
CGCAAAAAGAAAATATATGAAGAGAAAAACTTACTTGCAGTATCCTGTGC98640.10061465312068117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)