FastQCFastQC Report
Wed 11 May 2022
EGAF00003619293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133614567
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCATCG3866204428.935500722761766No Hit
ATTGGCGT3643485027.268621092788482Illumina PCR Primer Index 6 (100% over 8bp)
TAGTTGTC3024073722.632814429582368No Hit
GCAACAAA2713486520.30831338921302No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)