FastQCFastQC Report
Wed 11 May 2022
EGAF00003619296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97677975
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCTCC2832094128.994193419755064No Hit
AACGTCAA2788654628.549471874288955No Hit
CTGCGATG2239734522.92978022937105No Hit
TGTAAGGT1806966418.499220525405036No Hit
GCCTCTCC1258320.12882330945128623No Hit
GCATCTCA1136600.11636195365434224No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)