FastQCFastQC Report
Wed 11 May 2022
EGAF00003619301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159655923
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC6180372738.710575742310546No Hit
GGTTTACT3850594024.118077974470136No Hit
CTAAACGG3215302020.138945925607786No Hit
AACCGTAA2597993316.272451727331156No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)