FastQCFastQC Report
Wed 11 May 2022
EGAF00003619308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003619308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153629665
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATCA4061579226.43746700873168No Hit
AGTTCGGC3875998025.229489369777642No Hit
TCCGGAAG3792368524.68513161178865No Hit
GTAATCTT3516116222.886961317008662No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)